# 23 October 2013 # graph description for the Kim-O'Shea graph from # Kim, O'Shea, "A quantitative model of transcription factor-activated gene expression", Nat. Struct. Mol. Biol., 15:1192-8 2008 # as described in Figure 4B of # Ahsendorf, Wong, Eils, Gunawardena, "A framework for modelling gene regulation that accommodates non-equilibrium mechanisms", submitted, 2013. # # from Figure 4B, the edge labels are encoded as # a = kassoc, b = kexpdissoc, c = knucdissoc, d = kremod, e = kreass # (11,a,10) (6,a,5) (1,a,4) (6,a,1) (5,a,4) (2,a,3) (7,a,8) (12,a,9) (7,a,2) (8,a,3) (10,b,11) (5,b,6) (4,b,1) (3,b,2) (8,b,7) (9,b,12) (1,c,6) (2,c,7) (4,c,5) (3,c,8) (1,d,2) (4,d,3) (5,d,8) (10,d,5) (9,d,8) (12,e,11) (7,e,6) (6,e,11) (7,e,12) (2,e,1) (3,e,4) (8,e,5) (9,e,10) (8,e,9) (5,e,10)